| Lake | County | Latitude | Longitude |
| Sandee Lake | City of Virginia | 36.873597 | -76.033303 |
| Scarborough Gut | Accomack | 37.559127 | -75.912190 |
| Selby Mill Branch | Accomack | 38.001205 | -75.445634 |
| Seminole Lake | Campbell | 37.244219 | -79.197677 |
| Sengers Mountain Lak | Augusta | 37.990206 | -79.121482 |
| Settling Basin | City of Richmond | 37.548246 | -77.506407 |
| Seven Fountians | Shenandoah | 38.844192 | -78.403077 |
| Shannon Branch | Westmoreland | 38.056545 | -76.557444 |
| Sherando Lake | Augusta | 37.923187 | -79.004008 |
| Sherman Lake | Louisa | 37.975170 | -77.830625 |
| Shields Cove | Accomack | 37.556272 | -75.866486 |
| Shrader Lake | Amherst | 37.542693 | -78.986980 |
| Sideburn Branch | Fairfax | 38.805026 | -77.313414 |
| Silver Spring Lake | Campbell | 37.372463 | -79.091992 |
| Slagles Lake | Greensville | 36.757175 | -77.528478 |
| Sleepy Lake | City of Suffolk | 36.903692 | -76.504680 |
| Sleeter Lake | Loudoun | 39.122986 | -77.762803 |
| Sloop Gut | Accomack | 37.883279 | -75.449319 |
| Smalley Drain | Accomack | 37.911217 | -75.372146 |
| Smith Mountain Lake | Bedford | 37.104501 | -79.640080 |
| South Holston Lake | Washington | 36.612798 | -81.973851 |
| South Holston Reserv | Washington | 36.640259 | -81.937438 |
| Southwest Branch | Gloucester | 37.302463 | -76.444037 |
| Sports Lake | Cumberland | 37.635459 | -78.234184 |
| Spring Cove | Northumberland | 37.905965 | -76.303456 |
| St Peters Swamp | New Kent | 37.554625 | -77.001044 |
| Stafford Lake | Stafford | 38.435243 | -77.567510 |
| Stallion Branch | Loudoun | 38.980126 | -77.464445 |
| Stingaree Point Cove | Accomack | 37.479097 | -75.664915 |
| Stockton Lake | Prince Edward | 37.241202 | -78.560943 |
| Stumpy Lake | City of Chesapea | 36.758206 | -76.153957 |
| Sturgeon Swamp | Essex | 37.878117 | -76.941431 |
| Sugarland Run | Loudoun | 39.060942 | -77.366154 |
| Sunday Ditch | Northampton | 37.371118 | -75.854446 |
| Sunset Lake | Franklin | 37.094009 | -79.815255 |
| Swan Lake | City of Richmond | 37.541846 | -77.473406 |